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- Lang M. R., Gordon T. N., Patterson L. B., Johnson S. L., Parichy D. M. 2009. Basonuclin-2 functions in adult pigment pigment pattern formation and female fertillity. PLoS Genetics, in press.
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- Parichy D. M., Elizondo M. R., Mills M. G., Gordon T. N., and Engeszer R. E. 2009. Normal table of zebrafish post-embryonic development: staging by externally visible anatomy of the living fish. Developmental Dynamics, 238:2975–3015.
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- Hultman K. A., Budi E. H., Teasley D. C., Gottleib A. Y., Parichy D. M., and Johnson S. L. 2009. Defects in ErbB-dependent establishment of adult melanocyte stem cells reveals independent origins for embryonic and regeneration melanocytes. PLoS Genetics 5:e1000544, doi:10.1371/journal.pgen.1000544.
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- Parichy D. M. Animal pigment pattern: an integrative model system for studying the development, evolution, and regeneration of form. Seminars in Cell and Developmental Biology 20:63–64.
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- Ekker S. C., Parichy D. M. and Cheng K. C. 2009. Research implications of pigment biology in zebrafish. Zebrafish 5:233–235.
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- Mills, M. G., Patterson, L. B. 2008. Not just black and white: pigment pattern development and evolution in vertebrates. Seminars in Cell and Developmental BIology, doi:10.1016/semcdb.2008.11.012.
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- Budi, E. H., Patterson, L. B. and Parichy, D. M. 2008. Embryonic requirements for ErbB signaling in neural crest development and adult pigment pattern formation. Development 135:2603–2614.
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- Engeszer, R. E., Wang, G, Ryan, M. J. and Parichy, D. M. 2008. Sex-specific perceptual spaces for a vertebrate basal social aggregative behavior. Proc. Natl. Acad. Sci. U.S.A. 105:929–933.
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- Mills, M. G., Nuckels, R. J., and Parichy, D. M. 2007. Deconstructing evolution of adult phenotypes: genetic analyses of kit reveal homology and evolutionary novelty during adult pigment pattern development of Danio fishes. Development 134:1081–1090.
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- Engeszer, R. E., da Barbiano, A., Ryan, M. J., and Parichy, D. M. 2007. Timing and plasticity of shoaling behaviour in the zebrafish, Danio rerio. Animal Behaviour 74:1269–1275.
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- Streelman, J. T., Peichel C. L., and Parichy, D. M. 2007. Developmental genetics of adaptation in fishes: the case for novelty. Annual Review of Ecology, Evolution, and Systematics 38:655–782.
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- Engeszer, R. E., Patterson, L. B., Rao, A. A., and Parichy, D. M. 2007. Zebrafish in the wild: a review of natural history and new notes from the field. Zebrafish 4:21–40.
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- Kelsh R.N., and Parichy, D. M. 2007. “Pigmentation.” In: Fish Larval Physiology (Finn, R. N. and Kapoor, B. G., Eds.). Science Publishers Inc. In press.
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- Parichy, D. M. 2006. Homology and the evolution of novelty during danio pigment pattern development. Molecular and Developmental Evolution (Journal of Experimental Zoology) 306B:on-line.
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- Parichy, D. M. 2006. Evolution of danio pigment pattern development. Heredity 97:200–210.
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- Parichy, D. M., Reedy, M. V., and Erickson, C. A. 2006. “Regulation of melanoblast migration and differentiation.” Chapter 5, in: The Pigmentary System and its Disorders, 2nd Edition (Nordland, J. J., Boissy, R. E., Hearing, V. J., King, R. A. and Ortonne, J. P., Eds.). Oxford.
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- Elizondo, M. R., Arduini, B. L, Paulsen, J., Macdonald, E. L., Sabel, J. L., Henion, P. D., Cornell, R.A. and Parichy D. M. 2005. Defective skeletogenesis with kidney stone formation in dwarf zebrafish mutant for trpm7. Current Biology 15:667–671.
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- Parichy, D. M. 2005. “Variation and developmental biology: prospects for the future.” Chapter 20, in: Variation: A Hierarchical Examination of a Central Concept in Biology (B. Hallgrimsson and B. K. Hall, Eds.). Academic Press.
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- Quigley, I. K., Roberts, R., Manuel, J. L., Nuckels, R. J., Herrington, E., MacDonald, E. L. and Parichy, D. M. 2005. Evolutionary diversification of pigment pattern in Danio fishes: differential fms dependence and stripe loss in D. albolineatus. Development 132:89–104.
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- Smith, J. J., Kump, D. K., Walker, J. A., Parichy, D. M., and Voss. S. R. 2005. A comprehensive EST linkage map for tiger salamander and Mexican axolotl: enabling gene mapping and comparative genomics in Ambystoma. Genetics 171:1161–1171.
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- Quigley, I. K., Turner, J. M., Nuckels, R. J., Manuel, J. L., Budi, E. H., MacDonald, E. L., and Parichy, D. M. 2004. Pigment pattern evolution by differential deployment of neural crest and post-embryonic melanophore lineages in Danio fishes. Development 131:6053–6069.
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- Putta, S., Smith, J. J., Walker, J., Rondet, M., Weisrock. D. W., Monaghan, J., Samuels, A. K., Kump, K., King, D. C., Maness, N. J., Habermann, B., Tanaka E., Bryant S. V., Gardiner, D. M., Parichy, D. M., and Voss, S. R. 2004. From biomedicine to natural history research: EST resources for ambystomatid salamanders. BMC Genomics 5:54.
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- Engeszer, R. E., Ryan, M. J., and Parichy, D. M. 2004. Learned social preference in zebrafish. Current Biology 14:881–884.
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- Parichy, D. M. and Turner, J. M. 2003. Temporal and cellular requirements for fms signaling during zebrafish adult pigment pattern development. Development 130:817–833.
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- Parichy, D. M. and Turner, J. M. 2003. Zebrafish puma mutant decouples pigment pattern and somatic metamorphosis. Developmental Biology 256:242–257.
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- Parichy, D. M., Turner, J. M., and Parker, N. B. 2003. Essential role for puma in development of post-embryonic neural crest-derived cells in zebrafish. Developmental Biology 256:221–241.
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- Parichy, D. M. 2003. Pigment patterns: fish in stripes and spots. Current Biology 13:R947–R950.
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- Quigley, I. K., and Parichy, D. M. 2002. Pigment pattern formation in zebrafish: a model for developmental genetics and the evolution of form. Microsc. Res. Tech 58:442–455.
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- Voss, S. R., Smith, J. J., Gardiner, D., and Parichy, D. M. 2001. Conserved vertebrate chromosome segments in the large salamander genome. Genetics 158:735–746.
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- Parichy, D. M., and Johnson, S. L. 2001. Zebrafish hybrids suggest genetic mechanisms of pigment pattern diversification in Danio. Development, Genes and Evolution 211:319–328.
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- Parichy, D. M. 2001. “Pigment patterns of ectothermic vertebrates: heterochronic vs. non-heterochronic models for pigment pattern evolution.” In: Beyond Heterochrony (M. Zelditch, Ed.). Wiley.
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- Parichy, D. M. 2001. Homology and evolutionary novelty in the deployment of extracellular matrix molecules during pigment pattern formation in salamanders (Taricha, Ambystoma). Molecular and Developmental Evolution (Journal of Experimental Zoology) 291:13–24.
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- Parichy, D. M., Mellgren, E. M., Rawls, J. F., Lopes, S.S., Kelsh, R.N., and Johnson, S. L. 2000. Mutational analysis of endothelin receptor b1 (rose) during neural crest and pigment pattern development in the zebrafish, Danio rerio. Developmental Biology, 227:294–306.
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- Parichy, D. M., Ransom, D. G., Paw, B., Zon, L. and Johnson, S. L. 2000. An orthologue of the kit-related gene fms is required for development of neural crest–derived xanthophores and a subpopulation of adult melanocytes in the zebrafish, Danio rerio. Development 127:3031–3044.
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- Parichy, D. M., Rawls, J. F., Whitfield, T., Pratt, S. J. and Johnson, S. L. 1999. Zebrafish sparse corresponds to an orthologue of c-kit and is required for the morphogenesis of a subpopulation of melanocytes, but is not essential for hematopoiesis or primordial germ cell development. Development 126:3425–3436.
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- Parichy, D. M., Stigson, M. and Voss, S. R. 1999. Genetic analysis of steel and the PG-M/versican-encoding gene AxPG as candidate genes for the white (d) pigmentation mutant in the salamander Ambystoma mexicanum. Development, Genes and Evolution 209:349–356
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- Parichy, D. M. 1998. Experimental analysis of character coupling across a complex life cycle: pigment pattern metamorphosis in the tiger salamander, Ambystoma tigrinum tigrinum. Journal of Morphology 237:53–67.
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- Reedy, M. V., Parichy, D. M., Erickson, C. A., Mason, K. and Frost-Mason, S. K. 1998. “Regulation of melanoblast migration and differentiation.” Chapter 5, in: The Pigmentary System and its Disorders (Nordland, J. J., Boissy, R. E., Hearing, V. J., King, R. A. and Ortonne, J. P., Eds.). Oxford.
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- Parichy, D. M. 1996. Salamander pigment patterns: how can they be used to study developmental mechanisms and their evolutionary transformation? International Journal of Developmental Biology 40:871–884
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- Parichy, D. M. 1996. When neural crest and placodes collide: interactions between melanophores and the lateral lines that generate stripes in the salamander Ambystoma tigrinum tigrinum (Ambystomatidae). Developmental Biology175:283–300
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- Parichy, D. M. 1996. Pigment patterns of larval salamanders (Ambystomatidae, Salamandridae): the role of the lateral line sensory system and the evolution of pattern-forming mechanisms. Developmental Biology 175:265–282.
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- Parichy, D. M., and Kaplan, R. H. 1995. Maternal investment and developmental plasticity: functional consequences for locomotor performance of hatchling frog larvae. Functional Ecology 9:606–617.
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- Parichy, D. M., Shaffer, H. B. and Mangel, M. 1992. Heterochrony as a unifying theme in evolution and development. Evolution 46:1252–1254.
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- Parichy, D. M., and Kaplan, R. H. 1992. Maternal effects on offspring growth and development depend on environmental quality in the frog, Bombina orientalis. Oecologia 91:579–586.
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- Parichy, D. M., and Kaplan, R. H. 1992. Developmental consequences of tail injury on the oriental fire-bellied toad, Bombina orientalis. Copeia 1992:129–137.
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